Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ07355.1Possible outer membrane protein. (205 aa)    
Predicted Functional Partners:
EAQ06231.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 
 
 0.836
EAQ05922.1
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
    
 
 0.734
EAQ05464.1
SEC-C motif protein; COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA.
    
 
 0.587
secA
Translocase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.587
bamA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.573
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.548
EAQ05290.1
Putative quinoprotein; COG1520 FOG: WD40-like repeat.
   
 
 0.522
EAQ08079.1
Hypothetical protein.
  
    0.499
EAQ07338.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 
 
 0.497
EAQ06485.1
Lipoprotein, SmpA/OmlA family; COG2913 Small protein A (tmRNA-binding).
    
 
 0.471
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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