Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05424.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
EAQ05426.1
Putative dimethylamine corrinoid protein; COG5012 Predicted cobalamin binding protein.
 
     0.937
EAQ05427.1
COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
 
     0.830
EAQ05213.1
Hypothetical protein.
 
     0.822
EAQ05211.1
Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.
 
     0.811
EAQ07372.1
Iron-sulfur cluster-binding protein; COG3894 Uncharacterized metal-binding protein.
 
     0.810
EAQ06403.1
COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
     0.786
EAQ05425.1
Hypothetical protein.
       0.773
EAQ07011.1
COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
     0.760
EAQ05212.1
MetF-like protein; COG0685 5,10-methylenetetrahydrofolate reductase.
 
     0.712
EAQ07098.1
Transcriptional regulator, XRE family; COG1396 Predicted transcriptional regulators.
  
     0.673
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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