STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05432.1C4-dicarboxylate transport sensor protein DctB, putative; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system. (584 aa)    
Predicted Functional Partners:
EAQ05433.1
C4-dicarboxylate transport transcriptional regulatory protein DctD; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 0.979
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
  
 0.963
EAQ08009.1
COG0642 Signal transduction histidine kinase.
 
 0.949
EAQ05201.1
Sensory box sensor histidine kianse/response regulator; COG0642 Signal transduction histidine kinase.
  
 0.889
EAQ06517.1
COG0840 Methyl-accepting chemotaxis protein.
  
 0.862
EAQ06858.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 0.862
EAQ06345.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 0.861
EAQ06346.1
Methyl-accepting chemotaxis protein McpD; COG2202 FOG: PAS/PAC domain.
  
 0.861
EAQ07709.1
Putative periplasmic iron-binding protein; COG0642 Signal transduction histidine kinase.
   
 0.810
EAQ08164.1
Possible FlgD protein; COG1843 Flagellar hook capping protein.
   
    0.797
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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