STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05438.1COG2124 Cytochrome P450. (451 aa)    
Predicted Functional Partners:
EAQ05437.1
Hypothetical protein.
 
 
  0.969
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.897
EAQ05467.1
COG2124 Cytochrome P450.
 
 0.844
cysC
Binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate.
   
 0.808
EAQ06947.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.781
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.747
EAQ07471.1
core-2/I-branching enzyme family protein.
  
     0.740
EAQ07473.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
   0.739
EAQ07122.1
COG3562 Capsule polysaccharide export protein.
 
     0.738
EAQ05436.1
COG0785 Cytochrome c biogenesis protein.
       0.737
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.