STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05443.1COG3814 Uncharacterized protein conserved in bacteria. (165 aa)    
Predicted Functional Partners:
EAQ05444.1
COG2059 Chromate transport protein ChrA.
       0.781
EAQ06906.1
COG3820 Uncharacterized protein conserved in bacteria.
  
   
 0.778
EAQ07176.1
COG3750 Uncharacterized protein conserved in bacteria.
  
   
 0.777
EAQ05440.1
COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.
 
    0.772
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.741
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.733
EAQ06827.1
COG3807 Uncharacterized protein conserved in bacteria.
  
     0.711
EAQ05441.1
Hypothetical protein.
       0.694
EAQ07540.1
COG4395 Uncharacterized protein conserved in bacteria.
  
     0.687
EAQ08210.1
COG0625 Glutathione S-transferase.
  
     0.673
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.