STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05445.1COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain. (215 aa)    
Predicted Functional Partners:
EAQ05444.1
COG2059 Chromate transport protein ChrA.
       0.762
EAQ05443.1
COG3814 Uncharacterized protein conserved in bacteria.
       0.669
EAQ05440.1
COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.
       0.510
EAQ05441.1
Hypothetical protein.
       0.510
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.510
EAQ07351.1
Hypothetical protein.
  
     0.483
EAQ07782.1
Phosphoenolpyruvate carboxykinase.
  
     0.471
EAQ06640.1
Hypothetical protein.
  
     0.429
EAQ05197.1
Hypothetical protein; COG2252 Permeases.
  
     0.420
EAQ06776.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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