STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05446.1Coproporphyrinogen III oxidase; COG0591 Na+/proline symporter. (118 aa)    
Predicted Functional Partners:
EAQ07748.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.636
EAQ05447.1
Coproporphyrinogen III oxidase, oxygen-independent (HemN); COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.623
EAQ05448.1
COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
       0.486
EAQ06360.1
Hypothetical protein; COG5266 ABC-type Co2+ transport system, periplasmic component.
  
     0.472
EAQ07626.1
Protein pufQ.
  
     0.466
EAQ07956.1
Hypothetical protein.
  
     0.460
EAQ07730.1
Hydrolase, alpha/beta fold family; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.425
EAQ08056.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.422
EAQ07559.1
Regulatory protein, PpaA; COG5012 Predicted cobalamin binding protein.
  
     0.404
EAQ07682.1
Sugar/cation symporter, GPH family; COG2211 Na+/melibiose symporter and related transporters.
  
     0.400
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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