STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05456.1COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (471 aa)    
Predicted Functional Partners:
EAQ05454.1
Oxidoreductase, zinc-binding dehydrogenase family; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
    0.841
EAQ05457.1
Cyclopropane-fatty-acyl-phospholipid synthase CfaS; COG2230 Cyclopropane fatty acid synthase and related methyltransferases.
 
   
 0.807
EAQ05455.1
Aminotransferase, class V; COG0520 Selenocysteine lyase.
       0.776
EAQ05453.1
Hypothetical protein.
       0.584
EAQ07684.1
Putative cyclopropane/cyclopropene fatty acid synthesis protein, flavin amine oxidase; COG2907 Predicted NAD/FAD-binding protein.
 
   
 0.573
EAQ05452.1
Hypothetical protein; COG5486 Predicted metal-binding integral membrane protein.
       0.561
EAQ08121.1
Beta-Ig-H3/Fasciclin; COG2335 Secreted and surface protein containing fasciclin-like repeats.
 
  
 0.561
EAQ07849.1
COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase.
 
   
 0.513
EAQ05458.1
Tellurite resistance protein.
       0.507
EAQ07581.1
COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog).
  
  
 0.506
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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