Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05471.1Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (143 aa)    
Predicted Functional Partners:
EAQ05472.1
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.864
EAQ05470.1
Putative extracellular solute-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.862
EAQ05473.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.721
EAQ05595.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.471
EAQ05474.1
3-carboxy-cis,cis-muconate cycloisomerase; COG0015 Adenylosuccinate lyase.
       0.462
EAQ05593.1
TRAP dicarboxylate transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.438
EAQ05737.1
TRAP dicarboxylate transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.412
EAQ05466.1
Sulfatase family protein; COG3119 Arylsulfatase A and related enzymes.
 
     0.411
EAQ05594.1
Hypothetical protein; COG0531 Amino acid transporters.
  
     0.405
EAQ05326.1
Putative membrane protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
   
  0.402
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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