Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
EAQ05493.1COG0633 Ferredoxin. (104 aa)    
Predicted Functional Partners:
EAQ05494.1
Rubredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.963
EAQ06330.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.960
EAQ07148.1
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 
 0.939
EAQ05489.1
Hypothetical protein; COG1418 Predicted HD superfamily hydrolase.
 
    0.918
EAQ05491.1
Metal dependent phosphohydrolase; COG1418 Predicted HD superfamily hydrolase.
 
    0.917
EAQ06453.1
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.886
EAQ05492.1
Probable short-chain dehydrogenase, secreted; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  0.877
EAQ05486.1
COG2124 Cytochrome P450.
 
  0.874
EAQ05467.1
COG2124 Cytochrome P450.
 
 0.872
EAQ05488.1
Hypothetical protein; COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase.
 
    0.826
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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