STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05493.1COG0633 Ferredoxin. (104 aa)    
Predicted Functional Partners:
EAQ07148.1
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 
 0.982
EAQ06330.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.962
EAQ05494.1
Rubredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.935
EAQ05486.1
COG2124 Cytochrome P450.
 
 0.922
EAQ06453.1
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.917
EAQ05489.1
Hypothetical protein; COG1418 Predicted HD superfamily hydrolase.
 
    0.916
EAQ05491.1
Metal dependent phosphohydrolase; COG1418 Predicted HD superfamily hydrolase.
 
    0.916
EAQ07199.1
Putative ferredoxin reductase MocF; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
   0.901
EAQ05492.1
Probable short-chain dehydrogenase, secreted; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  0.900
nuoD
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
 
 0.894
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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