Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05520.1COG3861 Uncharacterized protein conserved in bacteria. (259 aa)    
Predicted Functional Partners:
EAQ07629.1
PufL, Photosynthetic reaction center L subunit.
   
 0.926
EAQ07630.1
PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
 0.925
EAQ07628.1
LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
 0.853
EAQ07627.1
LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
    
 0.844
EAQ05795.1
ABC transporter, inner membrane subunit; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
   
    0.529
EAQ07893.1
Hypothetical protein; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
   
    0.529
EAQ07560.1
2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.
  
    0.499
bchL
Light-independent protochlorophyllide reductase iron protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
  
    0.499
EAQ07568.1
Hypothetical protein.
  
    0.492
EAQ07622.1
Chlorophyllide reductase, BchX subunit; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.
   
    0.455
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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