Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06241.1Hypothetical protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component. (325 aa)    
Predicted Functional Partners:
EAQ06242.1
Hypothetical protein; COG3833 ABC-type maltose transport systems, permease component.
 
 
  0.992
EAQ06252.1
TRAP dicarboxylate transporter, DctP subunit, putative; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
     
  0.900
EAQ07884.1
Hypothetical permease; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.851
EAQ07883.1
Hypothetical protein; COG2031 Short chain fatty acids transporter.
 
    0.488
EAQ06240.1
Hypothetical protein.
       0.477
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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