STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
EAQ06249.1Transcriptional regulator, GntR family; COG2188 Transcriptional regulators. (271 aa)    
Predicted Functional Partners:
EAQ06252.1
TRAP dicarboxylate transporter, DctP subunit, putative; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
     0.896
EAQ06243.1
3-ketosteroid dehydrogenase, putative; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
    0.894
EAQ06245.1
Isochorismatase family protein; COG1335 Amidases related to nicotinamidase.
 
     0.889
EAQ06248.1
Tautomerase, putative; COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.
 
     0.885
EAQ06253.1
TRAP dicarboxylate transporter, DctQ subunit, putative; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.859
EAQ06251.1
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
     0.827
EAQ06247.1
Hydantoin utilization protein B, putative; COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.
 
     0.799
EAQ06250.1
Isopropylmalate isomerase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.790
EAQ06244.1
Isocitrate lyase family protein; COG2513 PEP phosphonomutase and related enzymes.
 
     0.777
EAQ06246.1
COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
 
     0.750
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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