STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06254.1TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (435 aa)    
Predicted Functional Partners:
EAQ06253.1
TRAP dicarboxylate transporter, DctQ subunit, putative; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
  0.990
EAQ06252.1
TRAP dicarboxylate transporter, DctP subunit, putative; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
     0.896
EAQ06248.1
Tautomerase, putative; COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.
 
     0.666
EAQ06525.1
Bacterial extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.634
EAQ06249.1
Transcriptional regulator, GntR family; COG2188 Transcriptional regulators.
 
     0.633
EAQ06243.1
3-ketosteroid dehydrogenase, putative; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
    0.604
EAQ06245.1
Isochorismatase family protein; COG1335 Amidases related to nicotinamidase.
 
     0.535
EAQ06995.1
Hypothetical extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.500
EAQ06250.1
Isopropylmalate isomerase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.489
EAQ06251.1
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.489
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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