STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06284.1Putative integrase/resolvase recombinase protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (453 aa)    
Predicted Functional Partners:
EAQ07608.1
Hypothetical protein.
  
     0.705
EAQ05618.1
Hypothetical protein.
  
     0.662
EAQ06526.1
LysM domain protein; COG1652 Uncharacterized protein containing LysM domain.
  
    0.662
EAQ07269.1
Coenzyme B12-binding; COG5012 Predicted cobalamin binding protein.
  
     0.638
EAQ07980.1
COG3238 Uncharacterized protein conserved in bacteria.
  
     0.575
EAQ06601.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.538
EAQ05917.1
Hypothetical protein.
  
     0.514
EAQ06285.1
Hypothetical protein.
       0.505
EAQ05579.1
Transcriptional regulator, AraC family; COG2207 AraC-type DNA-binding domain-containing proteins.
  
 
   0.497
EAQ08003.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.470
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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