EAQ06289.1 protein (Yoonia vestfoldensis SKA53)

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Score

EAQ06289.1

COG0211 Ribosomal protein L27. (52 aa)

Predicted Functional Partners:

rplU

0.998

rplM

0.997

rpsI

0.997

rpmG

0.996

rpsB

0.996

rpmB

0.996

rplT

0.996

rplK

0.996

rpsJ

0.996

rplC

0.996

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ06289.1	rplC	SKA53_04358	SKA53_13328	COG0211 Ribosomal protein L27.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.996
EAQ06289.1	rplK	SKA53_04358	SKA53_13248	COG0211 Ribosomal protein L27.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.996
EAQ06289.1	rplM	SKA53_04358	SKA53_04443	COG0211 Ribosomal protein L27.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
EAQ06289.1	rplT	SKA53_04358	SKA53_10219	COG0211 Ribosomal protein L27.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
EAQ06289.1	rplU	SKA53_04358	SKA53_04353	COG0211 Ribosomal protein L27.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
EAQ06289.1	rpmB	SKA53_04358	SKA53_09474	COG0211 Ribosomal protein L27.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.996
EAQ06289.1	rpmG	SKA53_04358	SKA53_01521	COG0211 Ribosomal protein L27.	COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.996
EAQ06289.1	rpsB	SKA53_04358	SKA53_04723	COG0211 Ribosomal protein L27.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.996
EAQ06289.1	rpsI	SKA53_04358	SKA53_04448	COG0211 Ribosomal protein L27.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.997
EAQ06289.1	rpsJ	SKA53_04358	SKA53_13323	COG0211 Ribosomal protein L27.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rplC	EAQ06289.1	SKA53_13328	SKA53_04358	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0211 Ribosomal protein L27.	0.996
rplC	rplK	SKA53_13328	SKA53_13248	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
rplC	rplM	SKA53_13328	SKA53_04443	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplT	SKA53_13328	SKA53_10219	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.998
rplC	rplU	SKA53_13328	SKA53_04353	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rpmB	SKA53_13328	SKA53_09474	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplC	rpmG	SKA53_13328	SKA53_01521	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.997
rplC	rpsB	SKA53_13328	SKA53_04723	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.998
rplC	rpsI	SKA53_13328	SKA53_04448	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplC	rpsJ	SKA53_13328	SKA53_13323	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999