Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
EAQ06308.1Site-specific recombinase, phage integrase family; COG0582 Integrase. (455 aa)    
Predicted Functional Partners:
EAQ05987.1
Hypothetical protein.
  
     0.738
EAQ06252.1
TRAP dicarboxylate transporter, DctP subunit, putative; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
  
     0.665
EAQ06935.1
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.644
EAQ06253.1
TRAP dicarboxylate transporter, DctQ subunit, putative; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.635
EAQ07446.1
COG1749 Flagellar hook protein FlgE.
  
     0.604
EAQ07440.1
COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
     0.590
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.558
rpsI
COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
   0.558
EAQ07402.1
Putative flagellar protein FliS; COG1516 Flagellin-specific chaperone FliS.
  
     0.529
EAQ07396.1
Flagellar basal-body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.514
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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