Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ06318.1Transcriptional regulator, TetR family; COG1309 Transcriptional regulator. (205 aa)    
Predicted Functional Partners:
EAQ06319.1
Polyphosphate kinase 2, putative.
       0.814
EAQ06317.1
Hypothetical protein.
       0.785
EAQ06521.1
Hypothetical protein.
 
     0.767
EAQ06320.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.755
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.695
EAQ06322.1
Hypothetical protein; COG1223 Predicted ATPase (AAA+ superfamily).
       0.622
EAQ05467.1
COG2124 Cytochrome P450.
  
 
 0.553
EAQ06947.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.489
EAQ05850.1
Hypothetical protein.
  
     0.460
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 
 0.438
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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