STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06322.1Hypothetical protein; COG1223 Predicted ATPase (AAA+ superfamily). (287 aa)    
Predicted Functional Partners:
EAQ05346.1
ATPase; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
   
  0.874
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
     0.832
EAQ06320.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.781
EAQ05295.1
ABC transporter, ATP-binding/permease protein; COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.
    
 0.761
EAQ06606.1
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
   
 0.730
EAQ06887.1
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
   
 0.730
EAQ06323.1
Rhodanese domain protein; COG0607 Rhodanese-related sulfurtransferase.
 
   0.722
EAQ06319.1
Polyphosphate kinase 2, putative.
       0.675
EAQ06318.1
Transcriptional regulator, TetR family; COG1309 Transcriptional regulator.
       0.629
EAQ06317.1
Hypothetical protein.
       0.541
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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