STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06330.1Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. (148 aa)    
Predicted Functional Partners:
EAQ06453.1
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.999
EAQ07068.1
Putative heat shock protein DnaJ; COG1076 DnaJ-domain-containing proteins 1.
  
 
 0.996
EAQ05455.1
Aminotransferase, class V; COG0520 Selenocysteine lyase.
  
 0.994
EAQ06447.1
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.994
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.973
EAQ05493.1
COG0633 Ferredoxin.
  
 0.962
EAQ05921.1
Iron-sulfur cluster-binding protein; COG0633 Ferredoxin.
  
 0.962
EAQ08150.1
Heat shock protein, Hsp70 family; COG0443 Molecular chaperone.
  
 
 0.953
EAQ06451.1
FeS assembly ATPase SufC; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
  
  
 0.945
EAQ07271.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
  
 0.940
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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