Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ06360.1Hypothetical protein; COG5266 ABC-type Co2+ transport system, periplasmic component. (293 aa)    
Predicted Functional Partners:
EAQ06361.1
Membrane protein, putative.
 
     0.932
EAQ06359.1
Kinase, pfkB family; COG0524 Sugar kinases, ribokinase family.
 
     0.796
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.763
EAQ06939.1
COG1122 ABC-type cobalt transport system, ATPase component.
    
 0.594
EAQ06940.1
Hypothetical protein; COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
    
 0.573
EAQ06941.1
CbiM protein; COG0310 ABC-type Co2+ transport system, permease component.
    
 0.564
EAQ06357.1
Hypothetical protein.
       0.554
EAQ06356.1
L-lysine exporter, putative; COG1279 Lysine efflux permease.
       0.473
EAQ05446.1
Coproporphyrinogen III oxidase; COG0591 Na+/proline symporter.
  
     0.472
EAQ07107.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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