Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EAQ06367.1Hypothetical protein; COG0500 SAM-dependent methyltransferases. (215 aa)    
Predicted Functional Partners:
EAQ05548.1
NADH-ubiquinone oxidoreductase family protein.
  
  
 0.846
EAQ06368.1
Glycosyltransferase, group 2 family protein.
  
   
0.659
EAQ06365.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.558
EAQ06366.1
Hypothetical protein.
       0.556
EAQ05725.1
COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
   
    0.545
EAQ07210.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
    
  0.543
EAQ05758.1
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
  
  
 0.543
EAQ07621.1
Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
   
 
 0.524
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
  
  
 0.492
EAQ07208.1
Hypothetical protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
    
  0.475
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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