Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06377.1COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (333 aa)    
Predicted Functional Partners:
EAQ06378.1
COG3878 Uncharacterized protein conserved in bacteria.
       0.740
EAQ06376.1
COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.
       0.559
EAQ05302.1
COG4311 Sarcosine oxidase delta subunit.
 
    0.503
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.477
EAQ05212.1
MetF-like protein; COG0685 5,10-methylenetetrahydrofolate reductase.
  
     0.470
EAQ06379.1
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.463
EAQ08236.1
Hypothetical protein; COG4311 Sarcosine oxidase delta subunit.
 
    0.458
EAQ06403.1
COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.430
EAQ05301.1
Sarcosine oxidase, alpha subunit family; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
     0.423
EAQ08235.1
Sarcosine oxidase, alpha subunit; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
     0.404
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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