Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ06384.1COG2366 Protein related to penicillin acylase. (823 aa)    
Predicted Functional Partners:
EAQ06922.1
Hypothetical protein.
  
     0.614
EAQ06381.1
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
       0.601
EAQ06382.1
ABC branched-chain amino acid transporter family, inner membrane subunit; COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
       0.601
EAQ06383.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.601
EAQ07973.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.579
EAQ06380.1
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
       0.509
EAQ07281.1
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.499
EAQ07919.1
Hypothetical protein.
  
     0.431
EAQ07853.1
Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein.
  
     0.403
mrdB
Rod shape-determining protein MreD; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
     0.400
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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