STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ06387.1Trk system potassium uptake protein TrkH; COG0168 Trk-type K+ transport systems, membrane components. (506 aa)    
Predicted Functional Partners:
EAQ06388.1
Trk system potassium uptake protein TrkA; COG0569 K+ transport systems, NAD-binding component.
 
 
 0.989
EAQ06390.1
Nitrogen regulation protein ntrY; COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.
       0.853
EAQ07230.1
Glutathione-regulated potassium-efflux system protein KefC, putative; COG4651 Kef-type K+ transport system, predicted NAD-binding component.
  
 
 0.826
EAQ06389.1
Nitrogen assimilation regulatory protein NtrX; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
       0.776
EAQ05980.1
Potassium uptake transporter, transmembrane component, TrkH; COG0168 Trk-type K+ transport systems, membrane components.
  
     0.774
EAQ06053.1
Putative potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
 
 0.723
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.674
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
       0.674
EAQ06392.1
Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.
       0.664
EAQ06393.1
tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.664
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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