Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06402.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
EAQ06401.1
Hypothetical protein.
 
     0.744
EAQ07147.1
Hypothetical protein.
  
     0.591
EAQ08037.1
Hypothetical protein.
  
     0.586
EAQ06707.1
Lipoprotein, putative.
  
     0.586
EAQ07291.1
Hypothetical protein.
  
     0.583
EAQ07021.1
Hypothetical protein.
  
     0.556
EAQ07791.1
Hypothetical protein.
  
     0.554
EAQ08056.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.533
EAQ06810.1
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.528
EAQ07023.1
Hypothetical protein.
  
     0.527
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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