Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06435.1COG1652 Uncharacterized protein containing LysM domain. (337 aa)    
Predicted Functional Partners:
EAQ05239.1
COG5281 Phage-related minor tail protein.
  
   0.948
EAQ05245.1
Hypothetical protein.
  
   0.740
EAQ05225.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.723
EAQ05226.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.723
EAQ06433.1
Undecaprenyl-phosphate galactosephosphotransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
       0.561
EAQ06434.1
Putative UTP--glucose-1-phosphate uridylyltransferase; COG1210 UDP-glucose pyrophosphorylase.
       0.561
EAQ05236.1
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
    0.484
EAQ06690.1
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
    0.484
EAQ06838.1
Hypothetical protein.
   
   0.435
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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