Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06442.1Hypothetical protein; COG2252 Permeases. (260 aa)    
Predicted Functional Partners:
EAQ05795.1
ABC transporter, inner membrane subunit; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
  
 0.995
EAQ05794.1
ABC transporter, ATPase subunit; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
  
 0.907
EAQ06443.1
Hypothetical protein.
   
   0.898
EAQ05792.1
Hypothetical protein; COG3218 ABC-type uncharacterized transport system, auxiliary component.
  
  0.815
EAQ07893.1
Hypothetical protein; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
  0.773
EAQ08175.1
COG1360 Flagellar motor protein.
   
   0.708
EAQ06437.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
     0.539
EAQ06438.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
       0.514
EAQ06439.1
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
       0.514
EAQ06440.1
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
       0.514
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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