Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06476.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
EAQ06477.1
Hydrolase arginase family; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
 
     0.864
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.823
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.823
EAQ06479.1
mazG family protein; COG1694 Predicted pyrophosphatase.
       0.615
EAQ06478.1
Amidohydrolase family protein; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.601
EAQ08165.1
COG3144 Flagellar hook-length control protein.
 
     0.528
EAQ06161.1
fixH protein, putative.
  
     0.499
EAQ05929.1
Lipoprotein, putative; COG0419 ATPase involved in DNA repair.
  
     0.495
EAQ07554.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
     0.491
EAQ06678.1
Hypothetical protein.
  
     0.486
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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