Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06508.1Hypothetical protein. (461 aa)    
Predicted Functional Partners:
EAQ06509.1
Hypothetical protein.
       0.811
EAQ06510.1
COG3825 Uncharacterized protein conserved in bacteria.
       0.811
EAQ06507.1
ATPase, AAA family; COG0714 MoxR-like ATPases.
       0.759
EAQ06919.1
Hypothetical protein.
  
     0.723
EAQ06348.1
Hypothetical protein; COG1079 Uncharacterized ABC-type transport system, permease component.
  
     0.716
EAQ06511.1
Peptidase, M48 family; COG0501 Zn-dependent protease with chaperone function.
 
     0.702
EAQ07321.1
Hypothetical protein.
  
     0.694
EAQ07858.1
Hypothetical protein.
  
     0.688
EAQ06135.1
Hypothetical protein.
  
     0.657
EAQ07310.1
Hypothetical protein.
  
     0.656
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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