Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06514.1Lipoprotein, putative. (185 aa)    
Predicted Functional Partners:
EAQ06513.1
Hypothetical protein; COG1092 Predicted SAM-dependent methyltransferases.
       0.753
EAQ07276.1
Hypothetical protein.
  
     0.752
EAQ06512.1
Hypothetical protein.
       0.752
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
       0.587
EAQ06365.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.482
EAQ07047.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.465
EAQ07309.1
Hypothetical protein.
  
     0.464
EAQ07955.1
Hypothetical protein.
  
     0.434
EAQ06155.1
Hypothetical protein.
  
     0.427
EAQ07006.1
Hypothetical protein.
  
     0.421
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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