STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06525.1Bacterial extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (314 aa)    
Predicted Functional Partners:
EAQ06523.1
TRAP transporter, DctM subunit, putative; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.887
EAQ06524.1
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.833
EAQ06576.1
TRAP-T family transporter, DctM (12 TMs) subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.731
EAQ05326.1
Putative membrane protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
     0.684
EAQ06254.1
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.634
EAQ05472.1
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
     0.604
EAQ06577.1
TRAP-T family transporter, small (4 TMs) inner membrane subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.600
EAQ08112.1
Putative TRAP-T family transporter, DctM (12TMs) subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.489
EAQ05595.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
     0.423
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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