Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06526.1LysM domain protein; COG1652 Uncharacterized protein containing LysM domain. (360 aa)    
Predicted Functional Partners:
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 0.840
EAQ06601.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.751
EAQ06599.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.713
EAQ06600.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.691
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
  
    0.676
EAQ06284.1
Putative integrase/resolvase recombinase protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.662
EAQ06602.1
COG0631 Serine/threonine protein phosphatase.
  
     0.658
EAQ06527.1
Hypothetical protein.
       0.651
EAQ06604.1
COG0515 Serine/threonine protein kinase.
 
  
 0.633
EAQ08167.1
Hypothetical protein.
  
     0.612
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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