Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ05257.1Cytochrome, putative; COG3038 Cytochrome B561; Belongs to the UPF0312 family. (397 aa)    
Predicted Functional Partners:
EAQ05258.1
Hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.842
EAQ05256.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
       0.670
EAQ06692.1
Hypothetical protein.
  
     0.557
EAQ05255.1
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.514
EAQ08055.1
Hypothetical protein; COG0435 Predicted glutathione S-transferase.
     
 0.450
EAQ06676.1
Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.421
trpC
COG0134 Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
     
 0.407
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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