Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAQ05265.1 | EAQ05266.1 | SKA53_05800 | SKA53_05805 | Hypothetical protein. | COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family. | 0.560 |
EAQ05265.1 | EAQ05267.1 | SKA53_05800 | SKA53_05810 | Hypothetical protein. | COG0174 Glutamine synthetase. | 0.424 |
EAQ05265.1 | tig | SKA53_05800 | SKA53_05795 | Hypothetical protein. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.403 |
EAQ05266.1 | EAQ05265.1 | SKA53_05805 | SKA53_05800 | COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family. | Hypothetical protein. | 0.560 |
EAQ05266.1 | EAQ05267.1 | SKA53_05805 | SKA53_05810 | COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family. | COG0174 Glutamine synthetase. | 0.719 |
EAQ05267.1 | EAQ05265.1 | SKA53_05810 | SKA53_05800 | COG0174 Glutamine synthetase. | Hypothetical protein. | 0.424 |
EAQ05267.1 | EAQ05266.1 | SKA53_05810 | SKA53_05805 | COG0174 Glutamine synthetase. | COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family. | 0.719 |
tig | EAQ05265.1 | SKA53_05795 | SKA53_05800 | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | Hypothetical protein. | 0.403 |