Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ05273.1Possible transcriptional activator; COG2771 DNA-binding HTH domain-containing proteins. (126 aa)    
Predicted Functional Partners:
EAQ05271.1
Autoinducer synthesis protein; COG3916 N-acyl-L-homoserine lactone synthetase.
 
 
 0.878
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
     
 0.822
EAQ06371.1
Hypothetical protein; COG0496 Predicted acid phosphatase.
  
     0.742
EAQ06078.1
Hypothetical protein.
  
     0.714
EAQ08213.1
Hypothetical protein.
  
     0.700
EAQ05274.1
COG1536 Flagellar motor switch protein.
 
     0.680
EAQ07166.1
Possible flagellar switch protein FliM; COG0477 Permeases of the major facilitator superfamily.
  
     0.611
EAQ08130.1
Hypothetical protein; COG2183 Transcriptional accessory protein.
  
    0.608
EAQ06635.1
Dihydroxy-acid dehydratase; COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.
  
     0.606
EAQ06784.1
Hypothetical protein.
  
     0.604
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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