Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05291.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
EAQ05290.1
Putative quinoprotein; COG1520 FOG: WD40-like repeat.
 
     0.830
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.712
EAQ07641.1
Hypothetical protein.
  
     0.645
EAQ07919.1
Hypothetical protein.
  
     0.594
EAQ06667.1
Hypothetical protein.
  
     0.588
EAQ06486.1
Hypothetical protein; COG1279 Lysine efflux permease.
  
    0.583
EAQ06807.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.542
EAQ07962.1
Membrane protein, putative.
  
     0.532
EAQ05292.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.497
EAQ05866.1
DnaJ domain protein; COG2214 DnaJ-class molecular chaperone.
  
     0.495
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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