STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05292.1Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (405 aa)    
Predicted Functional Partners:
EAQ05293.1
Transporter, AcrB/AcrD/AcrF family; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.981
EAQ06918.1
COG1538 Outer membrane protein.
 
 0.921
EAQ06757.1
AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.898
EAQ06729.1
Transporter, AcrB/AcrD/AcrF family; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.888
EAQ06728.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
 
 
 0.880
EAQ05404.1
Permease, putative; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.839
EAQ05345.1
COG1538 Outer membrane protein.
  
 0.802
EAQ07702.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.745
EAQ07220.1
Transporter, AcrB/AcrD/AcrF family; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.744
EAQ05872.1
COG0038 Chloride channel protein EriC.
  
     0.579
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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