STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05306.1COG3313 Predicted Fe-S protein. (80 aa)    
Predicted Functional Partners:
EAQ05304.1
Cytochrome c-type biogenesis protein CycH; COG4235 Cytochrome c biogenesis factor.
 
   
 0.894
EAQ05305.1
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.855
EAQ06518.1
Hypothetical protein.
  
     0.664
EAQ05300.1
COG4583 Sarcosine oxidase gamma subunit.
 
     0.661
EAQ05302.1
COG4311 Sarcosine oxidase delta subunit.
 
     0.641
EAQ07963.1
Hypothetical protein; COG1335 Amidases related to nicotinamidase.
  
     0.636
EAQ07778.1
Hypothetical protein.
  
     0.531
EAQ05301.1
Sarcosine oxidase, alpha subunit family; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
       0.516
EAQ05303.1
Sarcosine oxidase, beta subunit family; COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.508
EAQ07098.1
Transcriptional regulator, XRE family; COG1396 Predicted transcriptional regulators.
  
     0.451
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.