STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05641.1Glycosyltransferase, group 2 family protein; COG0793 Periplasmic protease. (345 aa)    
Predicted Functional Partners:
EAQ07715.1
Mannose-6-phosphate isomerase /; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.871
EAQ06884.1
Hypothetical protein.
 
     0.748
EAQ06885.1
epsK domain protein.
  
 
  0.748
EAQ06341.1
Type I secretion target repeat protein.
  
     0.737
EAQ06634.1
Hypothetical protein.
  
     0.735
EAQ05914.1
Hypothetical protein.
  
     0.709
EAQ06166.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.701
EAQ06958.1
Hypothetical protein.
  
     0.696
EAQ07477.1
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.691
EAQ06633.1
Hypothetical protein.
  
     0.691
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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