STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05671.1COG1024 Enoyl-CoA hydratase/carnithine racemase. (259 aa)    
Predicted Functional Partners:
EAQ05672.1
hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
 
  0.996
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 0.985
EAQ08009.1
COG0642 Signal transduction histidine kinase.
   
 0.962
EAQ05674.1
Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 
  0.919
EAQ05673.1
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
 
  0.882
EAQ05676.1
COG1960 Acyl-CoA dehydrogenases.
 
  0.822
EAQ07325.1
enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
0.809
lcdH
3-hydroxybutyryl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.756
EAQ07790.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.704
rpsI
COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.701
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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