STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05687.1COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family. (156 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease, adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.861
EAQ05686.1
COG3313 Predicted Fe-S protein.
  
     0.752
EAQ06034.1
OsmC/Ohr family protein; COG1764 Predicted redox protein, regulator of disulfide bond formation.
  
  
 0.749
EAQ07665.1
Thiol-specific antioxidant protein; COG0450 Peroxiredoxin.
  
  
 0.687
EAQ05688.1
Hypothetical protein.
       0.631
hpf
Ribosomal subunit interface protein, putative; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
    0.552
EAQ06847.1
Ribosomal subunit interface protein, putative.
   
    0.552
EAQ05865.1
COG0271 Stress-induced morphogen (activity unknown); Belongs to the BolA/IbaG family.
   
    0.548
EAQ05358.1
Transcriptional regulator, XRE family; COG2944 Predicted transcriptional regulator.
   
    0.545
EAQ05296.1
Possible peptidoglycan binding protein; COG1652 Uncharacterized protein containing LysM domain.
   
    0.539
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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