EAQ05691.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ05691.1

COG2020 putative protein-S-isoprenylcysteine methyltransferase. (149 aa)

Predicted Functional Partners:

EAQ06946.1

0.753

pntA

0.689

EAQ05689.1

0.679

kynU

0.659

EAQ05692.1

0.555

EAQ07955.1

0.514

EAQ06745.1

0.505

EAQ05211.1

0.464

EAQ05427.1

0.464

ahcY

0.464

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05211.1	EAQ05427.1	SKA53_03309	SKA53_03424	Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	0.997
EAQ05211.1	EAQ05691.1	SKA53_03309	SKA53_06292	Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	0.464
EAQ05211.1	EAQ06946.1	SKA53_03309	SKA53_15401	Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.902
EAQ05211.1	ahcY	SKA53_03309	SKA53_11523	Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.	S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.856
EAQ05427.1	EAQ05211.1	SKA53_03424	SKA53_03309	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.	0.997
EAQ05427.1	EAQ05691.1	SKA53_03424	SKA53_06292	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	0.464
EAQ05427.1	EAQ06745.1	SKA53_03424	SKA53_14396	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	Thiosulfate sulfurtransferase, Rhodanese-like; COG2897 Rhodanese-related sulfurtransferase.	0.452
EAQ05427.1	EAQ06946.1	SKA53_03424	SKA53_15401	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.914
EAQ05427.1	ahcY	SKA53_03424	SKA53_11523	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.924
EAQ05689.1	EAQ05691.1	SKA53_06282	SKA53_06292	NAD(P)+ transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	0.679
EAQ05689.1	kynU	SKA53_06282	SKA53_06302	NAD(P)+ transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.	0.494
EAQ05689.1	pntA	SKA53_06282	SKA53_06287	NAD(P)+ transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	NAD(P) transhydrogenase subunit alpha; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.	0.999
EAQ05691.1	EAQ05211.1	SKA53_06292	SKA53_03309	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.	0.464
EAQ05691.1	EAQ05427.1	SKA53_06292	SKA53_03424	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.	0.464
EAQ05691.1	EAQ05689.1	SKA53_06292	SKA53_06282	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	NAD(P)+ transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	0.679
EAQ05691.1	EAQ05692.1	SKA53_06292	SKA53_06297	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).	0.555
EAQ05691.1	EAQ06745.1	SKA53_06292	SKA53_14396	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	Thiosulfate sulfurtransferase, Rhodanese-like; COG2897 Rhodanese-related sulfurtransferase.	0.505
EAQ05691.1	EAQ06946.1	SKA53_06292	SKA53_15401	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.753
EAQ05691.1	EAQ07955.1	SKA53_06292	SKA53_09534	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	Hypothetical protein.	0.514
EAQ05691.1	ahcY	SKA53_06292	SKA53_11523	COG2020 putative protein-S-isoprenylcysteine methyltransferase.	S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.464