Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ05713.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
EAQ05714.1
MotA/TolQ/ExbB proton channel family protein; COG0811 Biopolymer transport proteins.
 
 
 0.996
EAQ05711.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.995
EAQ05712.1
COG0848 Biopolymer transport protein.
 
     0.965
EAQ05715.1
Hypothetical protein.
 
     0.964
EAQ05716.1
Putative Hemin receptor protein HmuR; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.962
hmuV
ATP-binding protein of ABC transporter; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
   
 0.903
tolQ
Proton transporter TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.894
EAQ06147.1
tonB domain protein, putative.
  
 
 0.889
EAQ05718.1
Putative hemin binding periplasmic transmembrane protein; COG4558 ABC-type hemin transport system, periplasmic component.
 
  
 0.887
EAQ05717.1
Hemin degrading factor; COG3720 putative heme degradation protein.
 
   
 0.866
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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