Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05722.1RNA polymerase sigma-70 factor. (210 aa)    
Predicted Functional Partners:
EAQ05723.1
Probable sigD protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.970
EAQ05727.1
COG2259 Predicted membrane protein.
 
   
 0.833
EAQ05721.1
Hypothetical protein; COG0583 Transcriptional regulator.
 
     0.807
EAQ05724.1
Hypothetical protein; COG5572 Predicted integral membrane protein.
 
   
 0.741
EAQ05726.1
Hypothetical protein.
 
   
 0.734
EAQ05725.1
COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
 
   
 0.692
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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