STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05724.1Hypothetical protein; COG5572 Predicted integral membrane protein. (103 aa)    
Predicted Functional Partners:
EAQ05725.1
COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
 
  
 0.991
EAQ05726.1
Hypothetical protein.
 
  
 0.972
EAQ05727.1
COG2259 Predicted membrane protein.
 
  
 0.938
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
   
    0.840
EAQ05722.1
RNA polymerase sigma-70 factor.
 
   
 0.689
EAQ05723.1
Probable sigD protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.636
EAQ05795.1
ABC transporter, inner membrane subunit; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
   
    0.497
EAQ07893.1
Hypothetical protein; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
   
    0.497
EAQ05721.1
Hypothetical protein; COG0583 Transcriptional regulator.
       0.426
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.