Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05725.1COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family. (282 aa)    
Predicted Functional Partners:
EAQ05726.1
Hypothetical protein.
  
 0.998
EAQ05724.1
Hypothetical protein; COG5572 Predicted integral membrane protein.
 
  
 0.992
EAQ05727.1
COG2259 Predicted membrane protein.
 
  
 0.982
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
   
    0.775
EAQ05722.1
RNA polymerase sigma-70 factor.
 
   
 0.692
EAQ05723.1
Probable sigD protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.669
EAQ06868.1
Hypothetical protein; COG0004 Ammonia permease.
  
  
 0.628
EAQ06367.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
   
    0.545
EAQ07698.1
Putative secreted calcium-binding protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
    0.513
EAQ05728.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
    0.496
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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