STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05743.1Malonate transporter, putative; COG0679 Predicted permeases. (309 aa)    
Predicted Functional Partners:
EAQ05744.1
Hypothetical protein; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.
       0.767
EAQ05745.1
Hydrolase, TatD family; COG0084 Mg-dependent DNase.
       0.767
EAQ05746.1
Putative HolB DNA polymerase III delta prime subunit; COG0470 ATPase involved in DNA replication.
       0.764
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.764
EAQ05748.1
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.764
EAQ05749.1
Lipoprotein, putative; COG0797 Lipoproteins.
       0.751
EAQ07926.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
  
  
 0.651
EAQ07520.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
  
  
 0.651
EAQ06151.1
Hypothetical protein.
  
     0.442
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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