Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05749.1Lipoprotein, putative; COG0797 Lipoproteins. (306 aa)    
Predicted Functional Partners:
EAQ05746.1
Putative HolB DNA polymerase III delta prime subunit; COG0470 ATPase involved in DNA replication.
       0.835
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.835
EAQ05748.1
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.835
EAQ05744.1
Hypothetical protein; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.
       0.832
EAQ05745.1
Hydrolase, TatD family; COG0084 Mg-dependent DNase.
       0.832
EAQ05929.1
Lipoprotein, putative; COG0419 ATPase involved in DNA repair.
 
     0.775
EAQ06348.1
Hypothetical protein; COG1079 Uncharacterized ABC-type transport system, permease component.
  
     0.765
EAQ07109.1
Hypothetical protein.
 
     0.760
EAQ05743.1
Malonate transporter, putative; COG0679 Predicted permeases.
       0.748
EAQ06135.1
Hypothetical protein.
 
     0.748
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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