STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05761.1Hypothetical protein; COG2771 DNA-binding HTH domain-containing proteins. (176 aa)    
Predicted Functional Partners:
EAQ05760.1
COG3658 Cytochrome b.
 
     0.891
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
     
 0.796
EAQ06974.1
Hypothetical protein.
 
     0.765
EAQ05759.1
Hypothetical protein.
       0.701
EAQ06973.1
COG3212 Predicted membrane protein.
 
     0.695
EAQ05271.1
Autoinducer synthesis protein; COG3916 N-acyl-L-homoserine lactone synthetase.
  
 
 0.681
EAQ07128.1
Hypothetical protein.
  
     0.546
EAQ07846.1
Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 
   0.529
EAQ06037.1
Transcriptional regulator, LuxR family; COG2771 DNA-binding HTH domain-containing proteins.
 
0.518
EAQ06002.1
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
 0.432
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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